유전체 정보 연계 시스템 Genome InfraNet

분석 프로그램 검색

Study : 1711042978

연구과제 정보

accession,
2014M3C9A3064706
1711042978
유전자-주석-질병간 연관성 분석을 위한 문헌 데이터 마이닝 기술 개발
미래부
한국전자통신연구원
박수준
2016
2016-10-01 ~ 2017-07-31
박수준
psj@etri.re.kr
0428606899

등록 프로그램 / 파이프라인 / 웹 서비스 정보

accession,

1. 데이터 가시화 프로그램   2. 대용량 유전체 분석

한글명칭 BioC 뷰어
영문명칭
프로그램 bioc_viewer-master.zip
매뉴얼 program_manual_sample.xlsx
모식도 프로그램 전체 모식도 없음
웹 서비스 주소
주요 내용 특징 BioC is an XML-based format designed to provide interoperability for text mining tools and manual curation results. A challenge of BioC as a standard format is to align annotations from multiple systems. Ideally, this should not be a major problem if users follow guidelines given by BioC key files. Nevertheless, the misalignment between text and annotations happens quite often because different systems tend to use different software development environments, e.g. ASCII vs. Unicode. We first implemented the BioC Viewer to assist BioGRID curators as a part of the BioCreative V BioC track (Collaborative Biocurator Assistant Task). For the BioC track, the BioC Viewer helped curate protein-protein interaction and genetic interaction pairs appearing in full-text articles. Here, we describe the BioC Viewer itself as well as improvements made to the BioC Viewer since the BioCreative V Workshop to address the misalignment issue of BioC annotations. While uploading BioC files, a BioC merge proce
주요 기능 1. The BioC Viewer is to create a visualization interface that can display annotations from text mining systems. 2. The BioC viewer obtains user feedback from BioGRID curators during the entire development process. 3. The BioC viewer have a plug-in function for PPI/GI curation.
사용방법 1. You need to install git, ruby, rails, and MySQL first. 2. Clone this repository: git clone https://github.com/dongseop/bioc_viewer.git 3. cd bioc_viewer 4. bundle install 5. You need to create your own 'database.yml' and 'secrets.yml' in 'config' directory. You may refer sample files in the config directory. 6. rake db:create 7. rake db:migrate 8. rails s
LINUX
기타
Rails: 4.2.5.1 MySQL: 5.7.10 Ruby 2.2 OS: MacOS X 10.11 (development) and Ubuntu 14.04.3 LTS (production)