유전체 정보 연계 시스템 Genome InfraNet

분석 프로그램 검색

Study : 1395050795

연구과제 정보

accession,
PJ011674012017
1395050795
글로벌 협력 및 협동연구 지원
농촌진흥청
군산대학교
최동수
2017
2017-01-01 ~ 2017-12-31
고영준
yjko@soongsil.ac.kr
01073553535

등록 프로그램 / 파이프라인 / 웹 서비스 정보

accession,

1. 데이터 가시화 프로그램   2. 기타 분석

한글명칭 IVAG: an Integrative Visualization Application for Various Types of Genomic Data Based on R-Shiny and Docker Platform
영문명칭 IVAG: an Integrative Visualization Application for Various Types of Genomic Data Based on R-Shiny and Docker Platform
프로그램 IVAG_program_manual.xlsx
매뉴얼 IVAG 메뉴얼.pdf
모식도 프로그램 전체 모식도 없음
웹 서비스 주소
주요 내용 특징 Next-Generation sequencing (NGS) technology has become a trend in genomics research area. There are many softwares and automated pipelines to analyze NGS data which ease pain for traditional scientists who are not familiar with computer programming. However, downstream analyses such as finding differentially expressed genes or visualizing LD map and GWAS result data still remain a challenge. Here, we introduce a dockerized web application written in R using Shiny platform to visualize pre-analyzed RNA-seq and GWAS data. In addition, we have integrated a genome browser based on JBrowse platform and automated intermediate parsing process required for custom track construction, so that users can easily build and navigate their personal genome tracks with in-house datasets. This application will help scientists to perform series of downstream analyses, and to get more integrative understanding about various types of genomic data by interactively visualizing them with customizable options.
주요 기능 RNA-seq volcano plot, GWAS Manhattan plot, Genome browser
사용방법
LINUX
기타
Docker